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LOC105776622 calmodulin-binding transcription activator 5 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105776622, updated on 10-Oct-2024

Summary

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Gene symbol
LOC105776622
Gene description
calmodulin-binding transcription activator 5
Locus tag
B456_011G198600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105776622 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (47561901..47568648)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (47994416..48001071)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene acetate--CoA ligase CCL3 Neighboring gene chitinase-like protein 2 Neighboring gene GTP-binding protein SAR1A Neighboring gene uncharacterized LOC105775540

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    47561901..47568648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012599382.2 → XP_012454836.1  calmodulin-binding transcription activator 5 isoform X1

    See identical proteins and their annotated locations for XP_012454836.1

    UniProtKB/TrEMBL
    A0A0D2UVG0, A0A0D2UVX0
    Conserved Domains (6) summary
    smart00015
    Location:785 → 805
    IQ; Calmodulin-binding motif
    cd00204
    Location:553 → 657
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:362 → 448
    TIG; IPT/TIG domain
    pfam03859
    Location:31 → 145
    CG-1; CG-1 domain
    pfam12796
    Location:536 → 628
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:566 → 596
    ANK; ANK repeat [structural motif]

  2. XM_012599380.2 → XP_012454834.1  calmodulin-binding transcription activator 5 isoform X1

    See identical proteins and their annotated locations for XP_012454834.1

    UniProtKB/TrEMBL
    A0A0D2UVG0, A0A0D2UVX0
    Conserved Domains (6) summary
    smart00015
    Location:785 → 805
    IQ; Calmodulin-binding motif
    cd00204
    Location:553 → 657
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:362 → 448
    TIG; IPT/TIG domain
    pfam03859
    Location:31 → 145
    CG-1; CG-1 domain
    pfam12796
    Location:536 → 628
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:566 → 596
    ANK; ANK repeat [structural motif]

  3. XM_052622788.1 → XP_052478748.1  calmodulin-binding transcription activator 5 isoform X3

  4. XM_012599386.2 → XP_012454840.1  calmodulin-binding transcription activator 5 isoform X2

    See identical proteins and their annotated locations for XP_012454840.1

    UniProtKB/TrEMBL
    A0A0D2UVX0, A0A0D2VPB6
    Conserved Domains (6) summary
    smart00015
    Location:783 → 803
    IQ; Calmodulin-binding motif
    cd00204
    Location:551 → 655
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:360 → 446
    TIG; IPT/TIG domain
    pfam03859
    Location:31 → 145
    CG-1; CG-1 domain
    pfam12796
    Location:534 → 626
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:564 → 594
    ANK; ANK repeat [structural motif]

  5. XM_012599384.2 → XP_012454838.1  calmodulin-binding transcription activator 5 isoform X1

    See identical proteins and their annotated locations for XP_012454838.1

    UniProtKB/TrEMBL
    A0A0D2UVG0, A0A0D2UVX0
    Conserved Domains (6) summary
    smart00015
    Location:785 → 805
    IQ; Calmodulin-binding motif
    cd00204
    Location:553 → 657
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:362 → 448
    TIG; IPT/TIG domain
    pfam03859
    Location:31 → 145
    CG-1; CG-1 domain
    pfam12796
    Location:536 → 628
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:566 → 596
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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