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LOC105776496 transcription factor MYB64 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105776496, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105776496
Gene description
transcription factor MYB64
Locus tag
B456_011G044100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105776496 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (3292772..3296383, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (3310912..3314777, complement)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene gibberellin 2-beta-dioxygenase Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene uncharacterized LOC105776497 Neighboring gene uncharacterized LOC105776498 Neighboring gene beta-amyrin synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB64

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    3292772..3296383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012599169.2 → XP_012454623.1  transcription factor MYB64

    See identical proteins and their annotated locations for XP_012454623.1

    UniProtKB/TrEMBL
    A0A0D2T291
    Conserved Domains (3) summary
    smart00717
    Location:154 → 202
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:206 → 248
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:157 → 217
    Myb_DNA-bind_6; Myb-like DNA-binding domain

RNA

  1. XR_001127991.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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