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LOC105774421 uncharacterized LOC105774421 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105774421, updated on 23-Nov-2023

Summary

Gene symbol
LOC105774421
Gene description
uncharacterized LOC105774421
Locus tag
B456_010G127900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

See LOC105774421 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 6 NC_068570.1 (27522023..27526240)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 10 NC_026938.1 (27456897..27461166)

Chromosome 6 - NC_068570.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene protein NRT1/ PTR FAMILY 7.1 Neighboring gene uncharacterized LOC105774208 Neighboring gene uncharacterized LOC105771857

Genomic regions, transcripts, and products

General protein information

Preferred Names
uncharacterized protein LOC105774421

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068570.1 Reference ASM2569854v1 Primary Assembly

    Range
    27522023..27526240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012596908.2XP_012452362.1  uncharacterized protein LOC105774421

    See identical proteins and their annotated locations for XP_012452362.1

    UniProtKB/TrEMBL
    A0A0D2R725
    Conserved Domains (4) summary
    cd04369
    Location:310375
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    smart00717
    Location:1067
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    COG5076
    Location:158375
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    cd00167
    Location:1165
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...