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LOC105772413 transcription factor bHLH162 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105772413, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105772413
Gene description
transcription factor bHLH162
Locus tag
B456_010G154100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105772413 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 6 NC_068570.1 (40556924..40557860)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 10 NC_026938.1 (42268390..42269263)

Chromosome 6 - NC_068570.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene uncharacterized LOC128041655 Neighboring gene eukaryotic translation initiation factor 3 subunit D Neighboring gene non-classical arabinogalactan protein 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH162

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068570.1 Reference ASM2569854v1 Primary Assembly

    Range
    40556924..40557860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012593685.2 → XP_012449139.1  transcription factor bHLH162

    See identical proteins and their annotated locations for XP_012449139.1

    UniProtKB/TrEMBL
    A0A0D2UFB6
    Conserved Domains (1) summary
    smart00353
    Location:16 → 65
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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