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LOC105770866 agamous-like MADS-box protein AGL80 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105770866, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105770866
Gene description
agamous-like MADS-box protein AGL80
Locus tag
B456_009G302800
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (27363846..27364313, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (27151562..27155715, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g27610 Neighboring gene histidine-containing phosphotransfer protein 2 Neighboring gene uncharacterized LOC105770867 Neighboring gene dynamin-related protein 12A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    27363846..27364313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052630299.1 → XP_052486259.1  agamous-like MADS-box protein AGL80

    UniProtKB/TrEMBL
    A0A0D2UW91
Nucleotide Protein
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