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LOC105770842 NAC domain containing protein 50 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105770842, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105770842
Gene description
NAC domain containing protein 50
Locus tag
B456_009G309300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105770842 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (28681695..28685284, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (28447256..28450859, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 6-2 Neighboring gene bZIP transcription factor 60 Neighboring gene uncharacterized LOC128041024 Neighboring gene monocopper oxidase-like protein SKU5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain containing protein 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    28681695..28685284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012592198.2 → XP_012447652.1  NAC domain containing protein 50 isoform X1

    See identical proteins and their annotated locations for XP_012447652.1

    UniProtKB/TrEMBL
    A0A0D2QRA9, A0A0D2TY32
    Conserved Domains (1) summary
    pfam02365
    Location:36 → 76
    NAM; No apical meristem (NAM) protein

  2. XM_012592199.2 → XP_012447653.1  NAC domain containing protein 50 isoform X2

    See identical proteins and their annotated locations for XP_012447653.1

    UniProtKB/TrEMBL
    A0A0D2QRA9, A0A0D2UWP0
    Conserved Domains (1) summary
    pfam02365
    Location:36 → 76
    NAM; No apical meristem (NAM) protein

  3. XM_012592200.2 → XP_012447654.1  NAC domain containing protein 50 isoform X3

    UniProtKB/TrEMBL
    A0A0D2QRA9
    Conserved Domains (1) summary
    pfam02365
    Location:68 → 93
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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