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LOC105769405 WRKY transcription factor 71 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105769405, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105769405
Gene description
WRKY transcription factor 71
Locus tag
B456_009G157300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105769405 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (12146034..12148126, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (12048709..12050947, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene probable purine permease 10 Neighboring gene protein REDUCED WALL ACETYLATION 3 Neighboring gene uncharacterized LOC105768425 Neighboring gene uncharacterized LOC105768424

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WRKY transcription factor 71
Names
probable WRKY transcription factor 71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    12146034..12148126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012590017.2 → XP_012445471.1  WRKY transcription factor 71

    See identical proteins and their annotated locations for XP_012445471.1

    UniProtKB/TrEMBL
    A0A0D2S1Y1
    Conserved Domains (1) summary
    smart00774
    Location:173 → 230
    WRKY; DNA binding domain
Nucleotide Protein
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