U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105769036 transcription factor bHLH110 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105769036, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105769036
Gene description
transcription factor bHLH110
Locus tag
B456_009G199600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105769036 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (15572653..15576791)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (15464247..15467673)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase homolog NTF3 Neighboring gene cyclin-T1-3 Neighboring gene bifunctional nuclease 2 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH8 Neighboring gene bifunctional dihydrofolate reductase-thymidylate synthase-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor bHLH110

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    15572653..15576791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012589410.2 → XP_012444864.1  transcription factor bHLH110

    See identical proteins and their annotated locations for XP_012444864.1

    UniProtKB/TrEMBL
    A0A0D2QJG8, A0A0D2TMW9
    Conserved Domains (1) summary
    smart00353
    Location:320 → 365
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases