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LOC105767961 transcription factor TCP2 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105767961, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105767961
Gene description
transcription factor TCP2
Locus tag
B456_009G153900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105767961 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (11851075..11857490)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (11754611..11761064)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128041251 Neighboring gene probable inositol transporter 2 Neighboring gene 50S ribosomal protein HLP, mitochondrial Neighboring gene F-box protein At5g46170 Neighboring gene glycolate oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    11851075..11857490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012587586.2 → XP_012443040.1  transcription factor TCP2

    See identical proteins and their annotated locations for XP_012443040.1

    UniProtKB/TrEMBL
    A0A0D2QGS2
    Conserved Domains (1) summary
    PLN03106
    Location:1 → 410
    TCP2; Protein TCP2; Provisional

RNA

  1. XR_001125681.2 RNA Sequence

  2. XR_001125682.2 RNA Sequence

  3. XR_001125683.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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