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LOC105767479 transcription factor ABORTED MICROSPORES [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105767479, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105767479
Gene description
transcription factor ABORTED MICROSPORES
Locus tag
B456_009G219100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105767479 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (17139867..17141574)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (17027361..17029208)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZAT10 Neighboring gene adenine phosphoribosyltransferase 1 Neighboring gene uncharacterized LOC105769331 Neighboring gene uncharacterized LOC105769332 Neighboring gene cyclin-D1-1 Neighboring gene strigolactone esterase D14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ABORTED MICROSPORES

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    17139867..17141574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012587030.2 → XP_012442484.1  transcription factor ABORTED MICROSPORES

    See identical proteins and their annotated locations for XP_012442484.1

    UniProtKB/TrEMBL
    A0A0D2TTM0
    Conserved Domains (1) summary
    cd00083
    Location:301 → 346
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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