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LOC105765590 transcription factor bHLH118 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105765590, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105765590
Gene description
transcription factor bHLH118
Locus tag
B456_008G282400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105765590 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (56494121..56495356, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (55870906..55873462, complement)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105765589 Neighboring gene transcription factor bHLH120 Neighboring gene receptor-like serine/threonine-protein kinase At4g25390 Neighboring gene probable protein phosphatase 2C 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH118

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    56494121..56495356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012584779.2 → XP_012440233.1  transcription factor bHLH118

    See identical proteins and their annotated locations for XP_012440233.1

    UniProtKB/TrEMBL
    A0A0D2RNY1, A0A0D2T8G4
    Conserved Domains (1) summary
    cd00083
    Location:66 → 123
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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