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LOC105764273 transcription factor bHLH90 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105764273, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105764273
Gene description
transcription factor bHLH90
Locus tag
B456_008G159000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105764273 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (42942417..42945366, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (42429414..42432467, complement)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene probable inactive poly [ADP-ribose] polymerase SRO2 Neighboring gene uncharacterized LOC105762193 Neighboring gene uncharacterized LOC128035510 Neighboring gene uncharacterized LOC105764274

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH90

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    42942417..42945366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012582799.2 → XP_012438253.1  transcription factor bHLH90 isoform X1

    See identical proteins and their annotated locations for XP_012438253.1

    UniProtKB/TrEMBL
    A0A0D2RG54, A0A0D2T1B2
    Conserved Domains (2) summary
    smart00353
    Location:289 → 335
    HLH; helix loop helix domain
    pfam14215
    Location:11 → 158
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

  2. XM_012582800.2 → XP_012438254.1  transcription factor bHLH90 isoform X2

    See identical proteins and their annotated locations for XP_012438254.1

    UniProtKB/TrEMBL
    A0A0D2PVR2, A0A0D2T1B2
    Conserved Domains (3) summary
    smart00353
    Location:289 → 335
    HLH; helix loop helix domain
    pfam14215
    Location:11 → 158
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cl09141
    Location:413 → 462
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Nucleotide Protein
Heading Accession and Version

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