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LOC105764002 probable WRKY transcription factor 47 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105764002, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105764002
Gene description
probable WRKY transcription factor 47
Locus tag
B456_008G134300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105764002 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (38623619..38628822)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (38158892..38164033)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105764000 Neighboring gene protein MAINTENANCE OF MERISTEMS-like Neighboring gene protein S-acyltransferase 18-like Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    38623619..38628822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012582428.2 → XP_012437882.1  probable WRKY transcription factor 47

    See identical proteins and their annotated locations for XP_012437882.1

    UniProtKB/TrEMBL
    A0A0D2SZY8, A0A0D2U2H4
    Conserved Domains (2) summary
    smart00774
    Location:277 → 333
    WRKY; DNA binding domain
    cl21462
    Location:87 → 121
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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