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LOC105763978 protein LATE ELONGATED HYPOCOTYL [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105763978, updated on 10-Oct-2024

Summary

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Gene symbol
LOC105763978
Gene description
protein LATE ELONGATED HYPOCOTYL
Locus tag
B456_008G132000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105763978 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (38213299..38221600, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (37749871..37758247, complement)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105763983 Neighboring gene protein LATE ELONGATED HYPOCOTYL Neighboring gene probably inactive receptor-like protein kinase At2g46850 Neighboring gene soluble inorganic pyrophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein LATE ELONGATED HYPOCOTYL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    38213299..38221600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012582380.2 → XP_012437834.1  protein LATE ELONGATED HYPOCOTYL isoform X1

    See identical proteins and their annotated locations for XP_012437834.1

    UniProtKB/TrEMBL
    A0A0D2T5D4
    Conserved Domains (2) summary
    smart00717
    Location:24 → 71
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cl21498
    Location:22 → 72
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_012582379.2 → XP_012437833.1  protein LATE ELONGATED HYPOCOTYL isoform X1

    See identical proteins and their annotated locations for XP_012437833.1

    UniProtKB/TrEMBL
    A0A0D2T5D4
    Conserved Domains (2) summary
    smart00717
    Location:24 → 71
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cl21498
    Location:22 → 72
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_052625775.1 → XP_052481735.1  protein LATE ELONGATED HYPOCOTYL isoform X2

    UniProtKB/TrEMBL
    A0A0D2U2B7
Nucleotide Protein
Heading Accession and Version

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