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LOC105763524 calmodulin-binding transcription activator 3 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105763524, updated on 10-Oct-2024

Summary

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Gene symbol
LOC105763524
Gene description
calmodulin-binding transcription activator 3
Locus tag
B456_008G089900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105763524 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (21360718..21369539, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (21118424..21127433, complement)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128035361 Neighboring gene uncharacterized LOC128035474 Neighboring gene uncharacterized LOC105762059 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    21360718..21369539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052624808.1 → XP_052480768.1  calmodulin-binding transcription activator 3 isoform X3

    UniProtKB/TrEMBL
    A0A0D2PRJ3

  2. XM_052624805.1 → XP_052480765.1  calmodulin-binding transcription activator 3 isoform X2

    UniProtKB/TrEMBL
    A0A0D2TZT6

  3. XM_012581753.2 → XP_012437207.1  calmodulin-binding transcription activator 3 isoform X1

    See identical proteins and their annotated locations for XP_012437207.1

    UniProtKB/TrEMBL
    A0A0D2RC84, A0A0D2SXH3
    Conserved Domains (7) summary
    smart00015
    Location:936 → 957
    IQ; Calmodulin-binding motif
    cd00204
    Location:688 → 797
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:503 → 589
    TIG; IPT/TIG domain
    pfam03859
    Location:21 → 135
    CG-1; CG-1 domain
    pfam12796
    Location:688 → 763
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:739 → 797
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:705 → 736
    ANK; ANK repeat [structural motif]

  4. XM_052624807.1 → XP_052480767.1  calmodulin-binding transcription activator 3 isoform X3

    UniProtKB/TrEMBL
    A0A0D2PRJ3

  5. XM_012581756.2 → XP_012437210.1  calmodulin-binding transcription activator 3 isoform X2

    See identical proteins and their annotated locations for XP_012437210.1

    UniProtKB/TrEMBL
    A0A0D2SXH3, A0A0D2TZT6
    Conserved Domains (7) summary
    smart00015
    Location:895 → 916
    IQ; Calmodulin-binding motif
    cd00204
    Location:647 → 756
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:462 → 548
    TIG; IPT/TIG domain
    pfam03859
    Location:13 → 94
    CG-1; CG-1 domain
    pfam12796
    Location:647 → 722
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:698 → 756
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:664 → 695
    ANK; ANK repeat [structural motif]

  6. XM_012581760.2 → XP_012437214.1  calmodulin-binding transcription activator 3 isoform X3

    See identical proteins and their annotated locations for XP_012437214.1

    UniProtKB/TrEMBL
    A0A0D2PRJ3, A0A0D2SXH3
    Conserved Domains (7) summary
    smart00015
    Location:886 → 907
    IQ; Calmodulin-binding motif
    cd00204
    Location:638 → 747
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:453 → 539
    TIG; IPT/TIG domain
    pfam03859
    Location:2 → 85
    CG-1; CG-1 domain
    pfam12796
    Location:638 → 713
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:689 → 747
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:655 → 686
    ANK; ANK repeat [structural motif]

  7. XM_012581755.2 → XP_012437209.1  calmodulin-binding transcription activator 3 isoform X2

    See identical proteins and their annotated locations for XP_012437209.1

    UniProtKB/TrEMBL
    A0A0D2SXH3, A0A0D2TZT6
    Conserved Domains (7) summary
    smart00015
    Location:895 → 916
    IQ; Calmodulin-binding motif
    cd00204
    Location:647 → 756
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:462 → 548
    TIG; IPT/TIG domain
    pfam03859
    Location:13 → 94
    CG-1; CG-1 domain
    pfam12796
    Location:647 → 722
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:698 → 756
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:664 → 695
    ANK; ANK repeat [structural motif]

  8. XM_052624806.1 → XP_052480766.1  calmodulin-binding transcription activator 3 isoform X3

    UniProtKB/TrEMBL
    A0A0D2PRJ3

  9. XM_052624804.1 → XP_052480764.1  calmodulin-binding transcription activator 3 isoform X2

    UniProtKB/TrEMBL
    A0A0D2TZT6

  10. XM_012581754.2 → XP_012437208.1  calmodulin-binding transcription activator 3 isoform X2

    See identical proteins and their annotated locations for XP_012437208.1

    UniProtKB/TrEMBL
    A0A0D2SXH3, A0A0D2TZT6
    Conserved Domains (7) summary
    smart00015
    Location:895 → 916
    IQ; Calmodulin-binding motif
    cd00204
    Location:647 → 756
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:462 → 548
    TIG; IPT/TIG domain
    pfam03859
    Location:13 → 94
    CG-1; CG-1 domain
    pfam12796
    Location:647 → 722
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:698 → 756
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:664 → 695
    ANK; ANK repeat [structural motif]

  11. XM_012581758.2 → XP_012437212.1  calmodulin-binding transcription activator 3 isoform X3

    See identical proteins and their annotated locations for XP_012437212.1

    UniProtKB/TrEMBL
    A0A0D2PRJ3, A0A0D2SXH3
    Conserved Domains (7) summary
    smart00015
    Location:886 → 907
    IQ; Calmodulin-binding motif
    cd00204
    Location:638 → 747
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:453 → 539
    TIG; IPT/TIG domain
    pfam03859
    Location:2 → 85
    CG-1; CG-1 domain
    pfam12796
    Location:638 → 713
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:689 → 747
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:655 → 686
    ANK; ANK repeat [structural motif]

  12. XM_052624809.1 → XP_052480769.1  calmodulin-binding transcription activator 3 isoform X4

Nucleotide Protein
Heading Accession and Version

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