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LOC105761572 transcription factor bHLH106 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105761572, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105761572
Gene description
transcription factor bHLH106
Locus tag
B456_007G352300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105761572 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (2646308..2648928, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (58257729..58260362)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene F-box protein At2g26850 Neighboring gene uncharacterized LOC105761573 Neighboring gene probable auxin efflux carrier component 1d Neighboring gene hydroxymethylglutaryl-CoA lyase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH106

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    2646308..2648928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012579423.2 → XP_012434877.1  transcription factor bHLH106

    See identical proteins and their annotated locations for XP_012434877.1

    UniProtKB/TrEMBL
    A0A0D2R4I3
    Conserved Domains (2) summary
    cd11455
    Location:57 → 132
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
    cl09141
    Location:148 → 212
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Nucleotide Protein
Heading Accession and Version

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