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LOC105650745 ethylene-responsive transcription factor RAP2-4 [ Jatropha curcas ]

Gene ID: 105650745, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105650745
Gene description
ethylene-responsive transcription factor RAP2-4
Locus tag
JCGZ_24071
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591695.1 (99186..100691, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124061.1 (559726..561623, complement)

NW_023591695.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene probable trehalose-phosphate phosphatase J Neighboring gene uncharacterized LOC105650755 Neighboring gene acyl-coenzyme A oxidase 2, peroxisomal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global analysis of transcriptome responses and gene expression profiles to cold stress of Jatropha curcas L. Wang H, et al. PLoS One, 2013. PMID 24349370, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor RAP2-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591695.1 Reference RJC1_Hi-C Primary Assembly

    Range
    99186..100691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012237693.3 → XP_012093083.1  ethylene-responsive transcription factor RAP2-4

    See identical proteins and their annotated locations for XP_012093083.1

    UniProtKB/TrEMBL
    A0A067LEQ3
    Conserved Domains (1) summary
    smart00380
    Location:164 → 223
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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