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LOC105650149 ethylene-responsive transcription factor ERF098 [ Jatropha curcas ]

Gene ID: 105650149, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105650149
Gene description
ethylene-responsive transcription factor ERF098
Locus tag
JCGZ_21508
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105650149 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590739.1 (4760326..4761325)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012125517.1 (1986835..1988230, complement)

NW_023590739.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g45960 Neighboring gene GDSL esterase/lipase At5g45960 Neighboring gene pathogenesis-related genes transcriptional activator PTI5 Neighboring gene rac-like GTP-binding protein RAC13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF098

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590739.1 Reference RJC1_Hi-C Primary Assembly

    Range
    4760326..4761325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012237028.3 → XP_012092418.1  ethylene-responsive transcription factor ERF098

    UniProtKB/TrEMBL
    A0A067JB92
    Conserved Domains (1) summary
    smart00380
    Location:117 → 181
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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