U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105649611 pathogenesis-related genes transcriptional activator PTI5 [ Jatropha curcas ]

Gene ID: 105649611, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105649611
Gene description
pathogenesis-related genes transcriptional activator PTI5
Locus tag
JCGZ_21507
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105649611 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590739.1 (4762797..4763657, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012125517.1 (1984511..1985382)

NW_023590739.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g45960 Neighboring gene ethylene-responsive transcription factor ERF098 Neighboring gene rac-like GTP-binding protein RAC13 Neighboring gene WUSCHEL-related homeobox 9

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pathogenesis-related genes transcriptional activator PTI5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590739.1 Reference RJC1_Hi-C Primary Assembly

    Range
    4762797..4763657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012236311.3 → XP_012091701.1  pathogenesis-related genes transcriptional activator PTI5

    See identical proteins and their annotated locations for XP_012091701.1

    UniProtKB/TrEMBL
    A0A067JB51
    Conserved Domains (1) summary
    smart00380
    Location:60 → 118
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases