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LOC105646928 protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [ Jatropha curcas ]

Gene ID: 105646928, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105646928
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Locus tag
JCGZ_24026
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105646928 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590973.1 (2683054..2685132, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124061.1 (119766..121850, complement)

NW_023590973.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105646523 Neighboring gene pentatricopeptide repeat-containing protein At4g18975, chloroplastic Neighboring gene U4 spliceosomal RNA Neighboring gene nodulin-26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global analysis of transcriptome responses and gene expression profiles to cold stress of Jatropha curcas L. Wang H, et al. PLoS One, 2013. PMID 24349370, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590973.1 Reference RJC1_Hi-C Primary Assembly

    Range
    2683054..2685132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012232920.3 → XP_012088310.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    See identical proteins and their annotated locations for XP_012088310.1

    UniProtKB/TrEMBL
    A0A067LEL5
    Conserved Domains (2) summary
    sd00017
    Location:167 → 187
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:165 → 187
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version

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