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LOC105435941 protein PHR1-LIKE 3 [ Cucumis sativus (cucumber) ]

Gene ID: 105435941, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105435941
Gene description
protein PHR1-LIKE 3
Locus tag
Csa_003411
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC105435941 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (28244579..28249649, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (26215471..26220539, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101211724 Neighboring gene myb family transcription factor PHL7 Neighboring gene probable E3 ubiquitin-protein ligase WAVH2 Neighboring gene probable galacturonosyltransferase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHR1-LIKE 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    28244579..28249649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011659794.2 → XP_011658096.1  protein PHR1-LIKE 3 isoform X4

    Conserved Domains (2) summary
    TIGR01557
    Location:42 → 97
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:122 → 175
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_011659793.2 → XP_011658095.1  protein PHR1-LIKE 3 isoform X3

    See identical proteins and their annotated locations for XP_011658095.1

    UniProtKB/TrEMBL
    A0A0A0KL09
    Conserved Domains (2) summary
    TIGR01557
    Location:42 → 98
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:136 → 180
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  3. XM_011659792.2 → XP_011658094.1  protein PHR1-LIKE 3 isoform X1

    Conserved Domains (2) summary
    TIGR01557
    Location:42 → 98
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:137 → 191
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  4. XM_031887509.1 → XP_031743369.1  protein PHR1-LIKE 3 isoform X5

    Conserved Domains (2) summary
    TIGR01557
    Location:42 → 96
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:122 → 176
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  5. XM_031887508.1 → XP_031743368.1  protein PHR1-LIKE 3 isoform X2

    Conserved Domains (2) summary
    TIGR01557
    Location:42 → 97
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:136 → 190
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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