U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105434642 transcription factor SPATULA [ Cucumis sativus (cucumber) ]

Gene ID: 105434642, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105434642
Gene description
transcription factor SPATULA
Locus tag
Csa_018607
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105434642 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (18154695..18158176)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (16741374..16744793)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105434641 Neighboring gene probable E3 ubiquitin-protein ligase RHG1A Neighboring gene probable serine/threonine-protein kinase At1g01540 Neighboring gene ADP,ATP carrier protein 1, mitochondrial-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor SPATULA

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    18154695..18158176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011651277.2 → XP_011649579.1  transcription factor SPATULA

    See identical proteins and their annotated locations for XP_011649579.1

    UniProtKB/TrEMBL
    A0A0A0LKR9
    Conserved Domains (1) summary
    cd11445
    Location:196 → 258
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases