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LOC105434392 squamosa promoter-binding-like protein 7 [ Cucumis sativus (cucumber) ]

Gene ID: 105434392, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105434392
Gene description
squamosa promoter-binding-like protein 7
Locus tag
Csa_011114
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC105434392 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (6629190..6631899)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (6445615..6448269)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 1 Neighboring gene hypothetical protein Neighboring gene metalloendoproteinase 4-MMP Neighboring gene uncharacterized LOC105434806 Neighboring gene uncharacterized LOC101220956 Neighboring gene malate dehydrogenase, cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    6629190..6631899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011652337.2 → XP_011650639.1  squamosa promoter-binding-like protein 7 isoform X2

    Conserved Domains (1) summary
    pfam03110
    Location:104 → 178
    SBP; SBP domain

  2. XM_004133726.3 → XP_004133774.1  squamosa promoter-binding-like protein 7 isoform X1

    See identical proteins and their annotated locations for XP_004133774.1

    UniProtKB/TrEMBL
    A0A0A0L8C0
    Conserved Domains (1) summary
    pfam03110
    Location:104 → 178
    SBP; SBP domain
Nucleotide Protein
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