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LOC105379231 uncharacterized LOC105379231 [ Homo sapiens (human) ]

Gene ID: 105379231, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379231
Gene description
uncharacterized LOC105379231
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward liver (RPKM 1.3) See more
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Genomic context

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See LOC105379231 in Genome Data Viewer
Location:
8p23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (9363285..9425640)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (10329990..10380644, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:9195231-9196164 Neighboring gene uncharacterized LOC157273 Neighboring gene uncharacterized LOC105379228 Neighboring gene Sharpr-MPRA regulatory region 4717 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:9222619-9223123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26982 Neighboring gene uncharacterized LOC105379230 Neighboring gene uncharacterized LOC124901884 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:9240606-9241805 Neighboring gene RNA, U6 small nuclear 526, pseudogene Neighboring gene DENN domain containing 4A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26983 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9413105-9413766 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9413767-9414426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26984 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26985 Neighboring gene tankyrase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26986 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26987 Neighboring gene microRNA 597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    9363285..9425640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956685.1 RNA Sequence

  2. XR_948940.3 RNA Sequence

  3. XR_948941.3 RNA Sequence

  4. XR_007060812.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    3925763..3988243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959162.1 RNA Sequence

  2. XR_002959161.1 RNA Sequence

  3. XR_002959160.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    10329990..10380644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078699.1 RNA Sequence

  2. XR_007078698.1 RNA Sequence

Nucleotide Protein
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