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LOC105379172 uncharacterized LOC105379172 [ Homo sapiens (human) ]

Gene ID: 105379172, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105379172
Gene description
uncharacterized LOC105379172
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379172 in Genome Data Viewer
Location:
5q23.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (131019893..131068550)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (131538742..131587542)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene ribosomal protein L11 pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr5:130400159-130400717 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:130447686-130448186 Neighboring gene Sharpr-MPRA regulatory region 1831 Neighboring gene H3K27ac hESC enhancers GRCh37_chr5:130499678-130500338 and GRCh37_chr5:130500339-130500998 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16302 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16303 Neighboring gene histidine triad nucleotide binding protein 1 Neighboring gene LYR motif containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    131019893..131068550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058928.1 RNA Sequence

  2. XR_948781.2 RNA Sequence

  3. XR_948780.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    131538742..131587542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075941.1 RNA Sequence

  2. XR_007075939.1 RNA Sequence

  3. XR_007075940.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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