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LOC105378648 uncharacterized LOC105378648 [ Homo sapiens (human) ]

Gene ID: 105378648, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378648
Gene description
uncharacterized LOC105378648
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378648 in Genome Data Viewer
Location:
1p34.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (36686708..36694967, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (36549573..36557774, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:36931829-36932691 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:36946417-36947202 Neighboring gene Sharpr-MPRA regulatory region 4345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 757 Neighboring gene colony stimulating factor 3 receptor Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:36989208-36989708 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:36989709-36990209 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:36999986-37000486 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:37000487-37000987 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 759 Neighboring gene Sharpr-MPRA regulatory region 1123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37054575-37055075 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_7558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 760 Neighboring gene uncharacterized LOC107984941 Neighboring gene ferritin light chain pseudogene 18 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37174760-37175544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37196343-37197056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37195631-37196342 Neighboring gene CRISPRi-validated cis-regulatory element chr1.4865 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37225396-37225909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37231217-37231718 Neighboring gene uncharacterized LOC124904023 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:37235886-37236485 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37306912-37307481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37315505-37316004 Neighboring gene glutamate ionotropic receptor kainate type subunit 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37324384-37325242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37389776-37390276 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:37407041-37407936 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37424529-37425095 Neighboring gene MPRA-validated peak179 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37497871-37498770 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37498771-37499670

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    36686708..36694967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947188.2 RNA Sequence

  2. XR_007065829.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    36549573..36557774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070073.1 RNA Sequence

  2. XR_007070072.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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