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LINC01374 long intergenic non-protein coding RNA 1374 [ Homo sapiens (human) ]

Gene ID: 105378425, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01374provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1374provided by HGNC
Primary source
HGNC:HGNC:50631
See related
Ensembl:ENSG00000232229 AllianceGenome:HGNC:50631
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00018278
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01374 in Genome Data Viewer
Location:
10q23.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (89853906..89914956)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (90737404..90798463)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (91613663..91674713)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378424 Neighboring gene long intergenic non-protein coding RNA 865 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2597 Neighboring gene MARK2 pseudogene 16 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2598 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:91680718-91681917 Neighboring gene long intergenic non-protein coding RNA 1375 Neighboring gene small nuclear ribonucleoprotein D2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNAs expression signatures of hepatocellular carcinoma revealed by microarray. Liu WT, et al. World J Gastroenterol, 2014 May 28. PMID 24876753, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149079.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX100282
    Related
    ENST00000749379.1

  2. NR_149080.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138924, AL390206

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    89853906..89914956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    90737404..90798463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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