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LOC105378024 uncharacterized LOC105378024 [ Homo sapiens (human) ]

Gene ID: 105378024, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378024
Gene description
uncharacterized LOC105378024
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378024 in Genome Data Viewer
Location:
6q24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (139544542..139547690)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (140728363..140731511)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:139794122-139794622 Neighboring gene long intergenic non-protein coding RNA 1625 Neighboring gene CRISPRi-validated cis-regulatory element chr6.4965 Neighboring gene uncharacterized LOC105378023 Neighboring gene CRISPRi-validated cis-regulatory element chr6.4966 Neighboring gene MPRA-validated peak6156 silencer Neighboring gene FOXA motif-containing MPRA enhancer 251 Neighboring gene ATP synthase peripheral stalk-membrane subunit b pseudogene 6 Neighboring gene CRISPRi-validated cis-regulatory element chr6.4971 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:139961222-139961389 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17613 Neighboring gene CRISPRi-validated cis-regulatory element chr6.4973 Neighboring gene thyroid hormone receptor interactor 4 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    139544542..139547690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943068.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    140728363..140731511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077181.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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