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LOC105378011 uncharacterized LOC105378011 [ Homo sapiens (human) ]

Gene ID: 105378011, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378011
Gene description
uncharacterized LOC105378011
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 5.7), colon (RPKM 4.8) and 12 other tissues See more
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Genomic context

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See LOC105378011 in Genome Data Viewer
Location:
6q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (135195895..135236195, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (136384139..136424449, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901405 Neighboring gene uncharacterized LOC124901406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25098 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25099 Neighboring gene uncharacterized LOC105378010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25100 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:135491500-135491716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17564 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17566 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17567 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25102 Neighboring gene Sharpr-MPRA regulatory region 12483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25103 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25104 Neighboring gene MYB proto-oncogene, transcription factor Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:135570900-135572099 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:135573042-135573542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:135573543-135574043 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:135577907-135579106 Neighboring gene microRNA 548a-2 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:135585007-135585209 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:135591948-135592842 Neighboring gene VISTA enhancer hs1351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25105 Neighboring gene CRISPRi-validated MYB cis-regulatory element XLOC_042889 Neighboring gene uncharacterized LOC124901407 Neighboring gene Sharpr-MPRA regulatory region 12318 Neighboring gene Abelson helper integration site 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    135195895..135236195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744368.2 RNA Sequence

  2. XR_001744367.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    136384139..136424449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077159.1 RNA Sequence

  2. XR_007077158.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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