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LINC02511 long intergenic non-protein coding RNA 2511 [ Homo sapiens (human) ]

Gene ID: 105377441, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02511provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2511provided by HGNC
Primary source
HGNC:HGNC:53500
See related
Ensembl:ENSG00000248869 AllianceGenome:HGNC:53500
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02511 in Genome Data Viewer
Location:
4q28.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (136795902..137212799, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (140118485..140535741, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (137717057..138133953, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene TERF1 pseudogene 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:137515782-137516981 Neighboring gene uncharacterized LOC124900864 Neighboring gene long intergenic non-protein coding RNA 2510 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:138272073-138272574 Neighboring gene small EDRK-rich factor 1A pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_74681 Neighboring gene stathmin 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149105.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108491, DB480413
    Related
    ENST00000656956.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    136795902..137212799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    140118485..140535741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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