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LOC105377290 uncharacterized LOC105377290 [ Homo sapiens (human) ]

Gene ID: 105377290, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377290
Gene description
uncharacterized LOC105377290
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377290 in Genome Data Viewer
Location:
4q21.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (76615096..76647677, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (79955782..79988371, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene shroom family member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21629 Neighboring gene microRNA 548ah Neighboring gene microRNA 4450 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:77585909-77587108 Neighboring gene SUMO2 pseudogene 11 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr4:77610214-77610736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:77618582-77619300 Neighboring gene SHROOM3 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 6551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15489 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:77702656-77703855 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15490 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:77707749-77708250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:77708251-77708750 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:77722401-77723191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    76615096..76647677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741404.2 RNA Sequence

  2. XR_007058149.1 RNA Sequence

  3. XR_007058148.1 RNA Sequence

  4. XR_001741402.3 RNA Sequence

  5. XR_007058146.1 RNA Sequence

  6. XR_007058147.1 RNA Sequence

  7. XR_007058145.1 RNA Sequence

  8. XR_001741403.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    79955782..79988371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074726.1 RNA Sequence

  2. XR_007074728.1 RNA Sequence

  3. XR_007074727.1 RNA Sequence

  4. XR_007074724.1 RNA Sequence

  5. XR_007074723.1 RNA Sequence

  6. XR_007074725.1 RNA Sequence

  7. XR_007074721.1 RNA Sequence

  8. XR_007074722.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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