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LOC105377286 uncharacterized LOC105377286 [ Homo sapiens (human) ]

Gene ID: 105377286, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377286
Gene description
uncharacterized LOC105377286
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 2.1), testis (RPKM 1.9) and 10 other tissues See more
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Genomic context

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See LOC105377286 in Genome Data Viewer
Location:
4q21.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (76238706..76251677, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (79579298..79592356, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene nucleoporin 54 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21626 Neighboring gene uncharacterized LOC124900718 Neighboring gene NANOG hESC enhancer GRCh37_chr4:77075501-77076330 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15485 Neighboring gene scavenger receptor class B member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21628 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:77134378-77134782 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:77155049-77155925 Neighboring gene family with sequence similarity 47 member E Neighboring gene FAM47E-STBD1 readthrough Neighboring gene NFE2L2 motif-containing MPRA enhancer 290 Neighboring gene coiled-coil domain containing 158 Neighboring gene starch binding domain 1 Neighboring gene sorting nexin 5 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    76238706..76251677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938897.4 RNA Sequence

  2. XR_007058143.1 RNA Sequence

  3. XR_938896.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    79579298..79592356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074719.1 RNA Sequence

  2. XR_007074718.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials