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LOC105377262 uncharacterized LOC105377262 [ Homo sapiens (human) ]

Gene ID: 105377262, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377262
Gene description
uncharacterized LOC105377262
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377262 in Genome Data Viewer
Location:
4q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (66862864..67077632, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (70305450..70520475, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene microRNA 1269a Neighboring gene ribosomal protein S23 pseudogene 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:67430296-67431495 Neighboring gene NANOG hESC enhancer GRCh37_chr4:67472478-67473056 Neighboring gene RNA, U6 small nuclear 699, pseudogene Neighboring gene MPRA-validated peak5041 silencer Neighboring gene MPRA-validated peak5042 silencer Neighboring gene Sharpr-MPRA regulatory region 9439 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:68157353-68158552 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:68263965-68264720 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:68264721-68265476 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:68265477-68266232 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:68266233-68266986 Neighboring gene uncharacterized LOC101927237 Neighboring gene RNA, U1 small nuclear 63, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    66862864..67077632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938848.2 RNA Sequence

  2. XR_938847.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    70305450..70520475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074676.1 RNA Sequence

  2. XR_007074677.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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