U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105376817 uncharacterized LOC105376817 [ Homo sapiens (human) ]

Gene ID: 105376817, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105376817
Gene description
uncharacterized LOC105376817
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105376817 in Genome Data Viewer
Location:
1p36.13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (19512540..19529845, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (19335963..19353272, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene capping actin protein of muscle Z-line subunit beta Neighboring gene uncharacterized LOC124903869 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19773737-19774404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 302 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19787402-19787902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19787903-19788403 Neighboring gene Sharpr-MPRA regulatory region 3035 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19795542-19796332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19796333-19797122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 304 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19808059-19808744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19810819-19811326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19810310-19810818 Neighboring gene uncharacterized LOC105376819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19811327-19811835 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19813869-19814376 Neighboring gene uncharacterized LOC105376818 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:19837198-19837359 Neighboring gene RNA, U4 small nuclear 28, pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene MPRA-validated peak99 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr1:19896756-19897005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 305 Neighboring gene MICOS10 divergent transcript

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    19512540..19529845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947017.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    19335963..19353272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069931.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials