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SLC30A4-AS1 SLC30A4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105376714, updated on 28-Oct-2024

Summary

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Official Symbol
SLC30A4-AS1provided by HGNC
Official Full Name
SLC30A4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56661
See related
AllianceGenome:HGNC:56661
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
hLinfRNA4
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See SLC30A4-AS1 in Genome Data Viewer
Location:
15q21.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (45448354..45500048)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (43256515..43308814)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45741730-45742660 Neighboring gene uncharacterized LOC124903483 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45746566-45747066 Neighboring gene RNA, U7 small nuclear 5 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9361 Neighboring gene NANOG hESC enhancer GRCh37_chr15:45751227-45751805 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:45764241-45764930 Neighboring gene solute carrier family 30 member 4 Neighboring gene small nucleolar RNA U13 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 46 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6410 Neighboring gene small nucleolar RNA, H/ACA box 41B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45839047-45839548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45839549-45840048 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:45840653-45841852 Neighboring gene developmental pluripotency associated 5 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein SLC30A4-AS1
Names
RP11-519G16.3
human Long-noncoding inflammation associated RNA 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    45448354..45500048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047433408.1 → XP_047289364.1  uncharacterized protein SLC30A4-AS1 isoform X1

  2. XM_047433407.1 → XP_047289363.1  uncharacterized protein SLC30A4-AS1 isoform X1

  3. XM_047433410.1 → XP_047289366.1  uncharacterized protein SLC30A4-AS1 isoform X3

  4. XM_047433409.1 → XP_047289365.1  uncharacterized protein SLC30A4-AS1 isoform X2

RNA

  1. XR_007064614.1 RNA Sequence

  2. XR_007064615.1 RNA Sequence

  3. XR_007064611.1 RNA Sequence

  4. XR_007064610.1 RNA Sequence

  5. XR_007064613.1 RNA Sequence

  6. XR_007064612.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    43256515..43308814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047446551.1 → XP_047302507.1  uncharacterized protein SLC30A4-AS1 isoform X1

  2. XM_047446550.1 → XP_047302506.1  uncharacterized protein SLC30A4-AS1 isoform X1

  3. XM_047446553.1 → XP_047302509.1  uncharacterized protein SLC30A4-AS1 isoform X3

  4. XM_047446552.1 → XP_047302508.1  uncharacterized protein SLC30A4-AS1 isoform X2

RNA

  1. XR_007085934.1 RNA Sequence

  2. XR_007085936.1 RNA Sequence

  3. XR_007085931.1 RNA Sequence

  4. XR_007085933.1 RNA Sequence

  5. XR_007085935.1 RNA Sequence

  6. XR_007085932.1 RNA Sequence

  7. XR_007085928.1 RNA Sequence

  8. XR_007085927.1 RNA Sequence

  9. XR_007085930.1 RNA Sequence

  10. XR_007085929.1 RNA Sequence

Nucleotide Protein
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