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ARL14EP-DT ARL14EP divergent transcript [ Homo sapiens (human) ]

Gene ID: 105376607, updated on 22-Oct-2024

Summary

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Official Symbol
ARL14EP-DTprovided by HGNC
Official Full Name
ARL14EP divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55517
See related
Ensembl:ENSG00000254532 AllianceGenome:HGNC:55517
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ARL14EP-DT in Genome Data Viewer
Location:
11p14.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (30042970..30322946, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (30177073..30457247, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (30064517..30344493, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1616 Neighboring gene uncharacterized LOC107984321 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:30046639-30047208 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:30047209-30047776 Neighboring gene potassium voltage-gated channel subfamily A member 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:30077713-30078416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:30078417-30079118 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:30218865-30220064 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4554 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:30289916-30290416 Neighboring gene follicle stimulating hormone subunit beta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:30344313-30344918 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3216 Neighboring gene ARF like GTPase 14 effector protein Neighboring gene uncharacterized LOC102723403

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187431.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440

  2. NR_187432.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440

  3. NR_187433.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440

  4. NR_187434.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440

  5. NR_187435.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440, AL358944

  6. NR_187436.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440, AL358944

  7. NR_187437.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124657, AL356440

  8. NR_187438.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356440
    Related
    ENST00000726814.1

  9. NR_187439.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356440

  10. NR_187440.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356440
    Related
    ENST00000726813.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    30042970..30322946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    30177073..30457247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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