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LOC105375977 uncharacterized LOC105375977 [ Homo sapiens (human) ]

Gene ID: 105375977, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375977
Gene description
uncharacterized LOC105375977
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 1.8), placenta (RPKM 1.0) and 10 other tissues See more
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Genomic context

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See LOC105375977 in Genome Data Viewer
Location:
9p23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (13440735..13487507)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (13450177..13496590)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene multiple PDZ domain crumbs cell polarity complex component Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:13251447-13252059 Neighboring gene Sharpr-MPRA regulatory region 14432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:13277167-13277882 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:13277883-13278598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:13278599-13279314 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:13369413-13369918 Neighboring gene long intergenic non-protein coding RNA 1235 Neighboring gene Sharpr-MPRA regulatory region 14550 Neighboring gene Sharpr-MPRA regulatory region 8614 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:13675451-13675952 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:13675953-13676452 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:13688525-13689065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:13696974-13697591 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:13697592-13698208 Neighboring gene VISTA enhancer hs852 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:13791089-13792288 Neighboring gene uncharacterized LOC101929507 Neighboring gene uncharacterized LOC124902326 Neighboring gene VISTA enhancer hs305 Neighboring gene long intergenic non-protein coding RNA 583

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    13440735..13487507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_929484.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    13450177..13496590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080185.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials