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LOC105375670 uncharacterized LOC105375670 [ Homo sapiens (human) ]

Gene ID: 105375670, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375670
Gene description
uncharacterized LOC105375670
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375670 in Genome Data Viewer
Location:
8q22.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (100431061..100457901)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (101557093..101583960)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901991 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:101348461-101349272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27693 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27694 Neighboring gene microRNA 4471 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:101421928-101423127 Neighboring gene RNF19A-ANKRD46 intergenic CAGE-defined high expression enhancer Neighboring gene uncharacterized LOC124901990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27700 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:101455271-101456130 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:101470299-101470976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:101471860-101472360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:101472361-101472861 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:101477753-101478339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27703 Neighboring gene uncharacterized LOC124901992 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:101499786-101500985 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:101503341-101504286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27707 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27708 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr8:101506997-101507937 and GRCh37_chr8:101507938-101508879 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:101508880-101509820 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:101511587-101512088 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:101512089-101512588 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19417 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27710 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:101522255-101522840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27711 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19418 Neighboring gene ankyrin repeat domain 46 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27713 Neighboring gene MPRA-validated peak7124 silencer Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 62

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    100431061..100457901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_928452.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    101557093..101583960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079275.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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