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LOC105375242 uncharacterized LOC105375242 [ Homo sapiens (human) ]

Gene ID: 105375242, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375242
Gene description
uncharacterized LOC105375242
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375242 in Genome Data Viewer
Location:
7p14.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (40858431..40900306, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (41016227..41058156, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene succinyl-CoA:glutarate-CoA transferase Neighboring gene uncharacterized LOC105375243 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:40750799-40751998 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:40756566-40757765 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:40854869-40855369 Neighboring gene uncharacterized LOC112267984 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:40924401-40925600 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:41045810-41047009 Neighboring gene long intergenic non-protein coding RNA 1450 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:41068008-41069207 Neighboring gene Sharpr-MPRA regulatory region 15680 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:41098757-41099608 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:41104940-41106139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25895 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:41146908-41148107 Neighboring gene uncharacterized LOC105375241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18119 Neighboring gene long intergenic non-protein coding RNA 1449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    40858431..40900306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_927191.3 RNA Sequence

  2. XR_001745181.2 RNA Sequence

  3. XR_927192.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    41016227..41058156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078431.1 RNA Sequence

  2. XR_007078430.1 RNA Sequence

  3. XR_007078432.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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