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LOC105374986 uncharacterized LOC105374986 [ Homo sapiens (human) ]

Gene ID: 105374986, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374986
Gene description
uncharacterized LOC105374986
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 4.8) and small intestine (RPKM 3.3) See more
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Genomic context

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See LOC105374986 in Genome Data Viewer
Location:
6p22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26257500..26261928)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26125241..26132104)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24222 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:26251592-26252322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24224 Neighboring gene H3 clustered histone 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24225 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:26253831-26254332 Neighboring gene H2B clustered histone 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:26254333-26254832 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17002 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:26269173-26269769 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24228 Neighboring gene H3 clustered histone 8 Neighboring gene H2A clustered histone 10, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26257500..26261928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744053.2 RNA Sequence

  2. XR_001744055.2 RNA Sequence

  3. XR_926613.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26125241..26132104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076644.1 RNA Sequence

  2. XR_007076645.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials