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LINC02357 long intergenic non-protein coding RNA 2357 [ Homo sapiens (human) ]

Gene ID: 105374540, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02357provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2357provided by HGNC
Primary source
HGNC:HGNC:53279
See related
Ensembl:ENSG00000283314 AllianceGenome:HGNC:53279
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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See LINC02357 in Genome Data Viewer
Location:
4p15.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (26070754..26104257)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (26052924..26086439)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21381 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15329 Neighboring gene small integral membrane protein 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21383 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:25994521-25995044 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15330 Neighboring gene uncharacterized LOC124900689 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:26031006-26031587 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:26031588-26032170 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21384 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21387 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21388 Neighboring gene zinc finger protein 248 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:26140937-26141706 Neighboring gene uncharacterized LOC105374541 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    26070754..26104257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_925506.3 RNA Sequence

    Related
    ENST00000637313.1

  2. XR_001741635.2 RNA Sequence

  3. XR_001741634.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    26052924..26086439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074562.1 RNA Sequence

  2. XR_007074561.1 RNA Sequence

  3. XR_007074560.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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