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LOC105374453 uncharacterized LOC105374453 [ Homo sapiens (human) ]

Gene ID: 105374453, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374453
Gene description
uncharacterized LOC105374453
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374453 in Genome Data Viewer
Location:
2p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (32885988..32903090, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (32933891..32950993, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene microRNA 4765 Neighboring gene tetratricopeptide repeat domain 27 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:32962230-32963429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15561 Neighboring gene Sharpr-MPRA regulatory region 12694 Neighboring gene long intergenic non-protein coding RNA 486 Neighboring gene Sharpr-MPRA regulatory region 6729 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:33111152-33111352 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58246 Neighboring gene uncharacterized LOC100271832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11345 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11346 Neighboring gene Sharpr-MPRA regulatory region 2981 Neighboring gene latent transforming growth factor beta binding protein 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:33281163-33281664 Neighboring gene H2AC histone family pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    32885988..32903090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939938.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    32933891..32950993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071933.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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