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LINC01991 long intergenic non-protein coding RNA 1991 [ Homo sapiens (human) ]

Gene ID: 105374266, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01991provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1991provided by HGNC
Primary source
HGNC:HGNC:52823
See related
AllianceGenome:HGNC:52823
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.9) and appendix (RPKM 0.5) See more
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Genomic context

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See LINC01991 in Genome Data Viewer
Location:
3q27.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (187958775..187976407, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (190776298..190793940, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (187676563..187694195, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187619577-187620078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20972 Neighboring gene uncharacterized LOC105374265 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20973 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20974 Neighboring gene Sharpr-MPRA regulatory region 2895 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:187707584-187708117 Neighboring gene uncharacterized LOC107986166 Neighboring gene Sharpr-MPRA regulatory region 1686 Neighboring gene Sharpr-MPRA regulatory region 10187 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187769983-187770955 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:187870480-187871380 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14995 Neighboring gene LPP antisense RNA 2 Neighboring gene LIM domain containing preferred translocation partner in lipoma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135537.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068295, BX403058

  2. NR_135538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA255943, AC068295, BX364319

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    187958775..187976407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    190776298..190793940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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