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LOC105374027 uncharacterized LOC105374027 [ Homo sapiens (human) ]

Gene ID: 105374027, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105374027
Gene description
uncharacterized LOC105374027
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374027 in Genome Data Viewer
Location:
3q13.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (106176847..106196861)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909403 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:105735033-105735598 Neighboring gene uncharacterized LOC105374026 Neighboring gene Sharpr-MPRA regulatory region 7303 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:105791574-105792416 Neighboring gene NANOG hESC enhancer GRCh37_chr3:105887777-105888301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20200 Neighboring gene uncharacterized LOC107986110 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14584 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20201 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:106014722-106015339 Neighboring gene uncharacterized LOC107986112 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:106035440-106036639 Neighboring gene uncharacterized LOC101929485

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000003.12 Chromosome 3 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    106176847..106196861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924311.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials