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LINC01953 long intergenic non-protein coding RNA 1953 [ Homo sapiens (human) ]

Gene ID: 105373863, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01953provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1953provided by HGNC
Primary source
HGNC:HGNC:52776
See related
Ensembl:ENSG00000236193 AllianceGenome:HGNC:52776
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01953 in Genome Data Viewer
Location:
2q34
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (213155816..213167710, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (213636662..213648555, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (214020540..214032434, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102725082 Neighboring gene uncharacterized LOC107985980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17057 Neighboring gene MPRA-validated peak4034 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17058 Neighboring gene IKAROS family zinc finger 2 Neighboring gene MPRA-validated peak4035 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17061 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17062 Neighboring gene uncharacterized LOC105373864 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:214052314-214053176 Neighboring gene uncharacterized LOC107985981 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:214053177-214054037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:214054900-214055760

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146974.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW510924, BI826738
    Related
    ENST00000755151.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    213155816..213167710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    213636662..213648555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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