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LINC01958 long intergenic non-protein coding RNA 1958 [ Homo sapiens (human) ]

Gene ID: 105373708, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01958provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1958provided by HGNC
Primary source
HGNC:HGNC:52784
See related
AllianceGenome:HGNC:52784
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01958 in Genome Data Viewer
Location:
2q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (156666600..156694450)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (157119721..157147742)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12021 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16664 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16665 Neighboring gene glycerol-3-phosphate dehydrogenase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16668 Neighboring gene uncharacterized LOC105373707 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:157486818-157487485 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:157487486-157488152 Neighboring gene VISTA enhancer hs413 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:157577018-157577565 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:157579973-157580531 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:157581637-157582513 Neighboring gene uncharacterized LOC124907897 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 7 Neighboring gene VISTA enhancer hs662

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    156666600..156694450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923506.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    157119721..157147742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072584.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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