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LINC01885 long intergenic non-protein coding RNA 1885 [ Homo sapiens (human) ]

Gene ID: 105373538, updated on 17-Sep-2024

Summary

Official Symbol
LINC01885provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1885provided by HGNC
Primary source
HGNC:HGNC:52704
See related
Ensembl:ENSG00000237880 AllianceGenome:HGNC:52704
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01885 in Genome Data Viewer
Location:
2q12.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (107382688..107542571, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (107844198..108004110, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (107999144..108159027, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:107803878-107804378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:107852209-107852853 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:107872612-107872786 Neighboring gene long intergenic non-protein coding RNA 1789 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:108085955-108086455 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:108118620-108119354 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:108119355-108120088 Neighboring gene uncharacterized LOC124905955 Neighboring gene long intergenic non-protein coding RNA 1886 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:108250055-108251254 Neighboring gene uncharacterized LOC105373539 Neighboring gene MPRA-validated peak3808 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:108321385-108321583 Neighboring gene gastric cancer associated transcript 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183423.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096669
    Related
    ENST00000414300.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    107382688..107542571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    107844198..108004110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)