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LOC105372829 uncharacterized LOC105372829 [ Homo sapiens (human) ]

Gene ID: 105372829, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372829
Gene description
uncharacterized LOC105372829
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372829 in Genome Data Viewer
Location:
21q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43993528..43997511)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (42349153..42353252)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45339493-45340392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45340393-45341290 Neighboring gene Sharpr-MPRA regulatory region 2423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45342191-45343088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45344887-45345786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45345787-45346684 Neighboring gene RNA, U6 small nuclear 859, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45351938-45352438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45354036-45354854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45358304-45359204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45359205-45360103 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45360643-45360814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45363715-45364558 Neighboring gene uncharacterized LOC105372826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45376043-45376543 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45401087-45401848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45401849-45402610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45402611-45403372 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45405825-45406355 Neighboring gene RNA, U6 small nuclear 1150, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13377 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18561 Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45452244-45452456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18562 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45487136-45487678 Neighboring gene H2A.Z histone pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45526826-45527342 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45530994-45531196 Neighboring gene Sharpr-MPRA regulatory region 9823 Neighboring gene PWP2 small subunit processome component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    43993528..43997511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937781.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    42349153..42353252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090219.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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