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LINC00237 long intergenic non-protein coding RNA 237 [ Homo sapiens (human) ]

Gene ID: 105372556, updated on 22-Oct-2024

Summary

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Official Symbol
LINC00237provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 237provided by HGNC
Primary source
HGNC:HGNC:38166
See related
Ensembl:ENSG00000225127 MIM:614992; AllianceGenome:HGNC:38166
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00237
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00237 in Genome Data Viewer
Location:
20p11.23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (21085576..21106358, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (21144998..21165813, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (21066217..21086999, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S11 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 3083 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:20998081-20999280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:21000384-21001342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21033223-21033723 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:21070570-21071121 Neighboring gene Sharpr-MPRA regulatory region 9877 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:21081423-21082292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17616 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:21098327-21099526 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17617 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12713 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17618 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17619 Neighboring gene RPL24 pseudogene 2 Neighboring gene RNA, 5S ribosomal pseudogene 477 Neighboring gene kizuna centrosomal protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A homozygous balanced reciprocal translocation suggests LINC00237 as a candidate gene for MOMO (macrosomia, obesity, macrocephaly, and ocular abnormalities) syndrome. Vu PY, et al. Am J Med Genet A, 2012 Nov. PMID 23034868
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147212.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121759, DA272070
    Related
    ENST00000593272.1

  2. NR_190203.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121759
    Related
    ENST00000420705.3

  3. NR_190204.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121759
    Related
    ENST00000455890.2

  4. NR_190205.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121759
    Related
    ENST00000655093.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    21085576..21106358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    21144998..21165813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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