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ST8SIA5-DT ST8SIA5 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105372097, updated on 17-Sep-2024

Summary

Official Symbol
ST8SIA5-DTprovided by HGNC
Official Full Name
ST8SIA5 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55267
See related
AllianceGenome:HGNC:55267
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See ST8SIA5-DT in Genome Data Viewer
Location:
18q21.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (46755549..46800558)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (46947543..46986536)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372096 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:44255923-44256770 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:44256771-44257616 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:44297037-44297823 Neighboring gene ribosomal protein S21 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9420 Neighboring gene NANOG hESC enhancer GRCh37_chr18:44374579-44375080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13281 Neighboring gene protein inhibitor of activated STAT 2 Neighboring gene ubiquitin specific peptidase 4 (proto-oncogene) pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13282 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:44447848-44449047 Neighboring gene uncharacterized LOC124904294

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    46755549..46800558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753435.2 RNA Sequence

  2. XR_007066356.1 RNA Sequence

  3. XR_007066357.1 RNA Sequence

  4. XR_001753434.3 RNA Sequence

  5. XR_001753432.3 RNA Sequence

  6. XR_001753433.3 RNA Sequence

  7. XR_001753436.3 RNA Sequence

  8. XR_935431.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    46947543..46986536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088382.1 RNA Sequence

  2. XR_007088379.1 RNA Sequence

  3. XR_007088384.1 RNA Sequence

  4. XR_007088381.1 RNA Sequence

  5. XR_007088378.1 RNA Sequence

  6. XR_007088380.1 RNA Sequence

  7. XR_007088383.1 RNA Sequence

  8. XR_007088377.1 RNA Sequence